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LAMMA 2021

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Genomics takes farm selection to a new level

Using genomic testing to identify the best replacements and serving them to sexed semen is helping increase selection pressure and drive genetic gain on one Anglesey farm.

Genomics takes farm selection to a new level

Trevor Lloyd believes combining genomic testing of heifers with a sexed and beef strategy could be a game-changer for UK dairy farmers.


He says: “It is exciting and groundbreaking. I think it has the potential to be the next best thing since artificial insemination. It really has the potential to intensify your selection.”


Mr Lloyd runs the 420-cow Islandpride herd of pedigree Holsteins and Ayrshires at Ty Mawr Farm, Anglesey. Cows yield 10,400 litres at 4.2% fat and 3.4% protein.


His comments come 10 months into a trial breeding programme run with Cogent and his milk processor, Arla. In that time, all heifers have been genomically tested, with the best put to Sexed ULTRA 4M semen.


Sexed ULTRA 4M includes double the number of semen cells per straw than most sexed semen, which means it yields conception rates comparable to conventional.


This has given Mr Lloyd the confidence to also use it on his best cows, based on the pedigree of the female. Everything else is put to beef.


Mr Lloyd says: “I have not used conventional semen for 12 months and I cannot see me using it again. The 4M product is every bit as virile as conventional.


“Before the trial, we achieved total conception rates of 45% across 4,000 inseminations using conventional semen. With Sexed ULTRA 4M, we achieved 49% on more than 1,000 inseminations.”


Adopting a combined breeding approach brings several wins to the business; not only producing better quality heifers and fewer low value male dairy calves, but also driving selection intensity.




Since Arla’s contracts shifted focus towards milk constituents, Mr Lloyd has been selecting for kilograms of fat and protein. Breeding long-lived cows is also a key focus, with emphasis placed on lifespan, fertility and somatic cell counts.


He says: “We select on lifespan. The main reason I cull is infertility, so I need to select on fertility, but it is also low heritability, so you have to put greater selection pressure on it.”


The farm has been using Cogent’s Precision Match service for several years to score and correctively mate cows based on these traits.


Mr Lloyd says: “We have seen improvements from that. We had started to see significant uplift in fat and protein yields and also better animals. We found corrective mating via the programme was very effective.”


Mr Lloyd has become stricter when it comes to the number of chances he gives cows to get in-calf to dairy semen. Rather than giving a ‘good cow’ five to six serves to dairy, cows will now be given a maximum of two serves then put to beef. This will ultimately help drive fertility improvements.

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The use of genomic testing takes the farm’s selection programme to a whole new level. The herd’s specific breeding aims have been used to create the Cogent Custom Index (CCI).


The CCI is produced for individual farms after taking into account their specific milk contract requirements.


A group of bulls are selected to match these specific breeding aims in discussion with Cogent business development manager Rudolph Linde.


Mr Lloyd currently uses eight Cogent dairy sires; Agronaut, Jones, Esquire, B52, Lancaster, Chairman, Fantastic and Rubicon.


He says: “We use a team of bulls to correctively mate. I cannot emphasis how important that is to drive genetic gain.”


The CCI for Ty Mawr Farm was used to rank heifers based on genomic test results, with the top 40% going to sexed and the rest to beef.


Mr Lloyd says: “We can now more closely analyse or highlight the best animal in the context of our breeding aims and breed the best. Our breeding goals have not changed, just the ability to achieve those targets more quickly.”


In the future, the proportion of animals put to sexed will be reduced, as the farm team’s confidence increases in the accuracy of genomic testing for more targeted use.


Generally, the genomic test results tend to follow parent breeding values. However, there can be a significant number of outliers, as Mr Lloyd saw first-hand following genomic screening of his heifers.


He says: “There are enough significant outliers, or ones that get re-ranked which justify genomic testing. That is the killer reason to genomic test.”




Cogent Fertility+ Aberdeen-Angus semen is used on lower end heifers and cows which are not put to sexed semen. The fact fewer dairy bull calves are being produced and beef animals which are produced have more value, has positive financial implications, with an Aberdeen-Angus bull fetching about £150, versus about £35-£40 for a pure-bred Holstein bull.


However, Mr Lloyd believes the moral and animal welfare implications of not producing low value dairy bull calves is far stronger.


He says: “Ridding [the industry] of low value calves, that may be routinely euthanised, must be good for the industry. The fewer we have, the better.”


Mr Lloyd says this is one of the main reasons Arla initiated the trial breeding programme with a sample of its suppliers. Mr Lloyd believes that moving forward, producing dairy bulls as a waste product of dairying is ‘simply irresponsible.’


Hence why combining the latest technologies to produce an efficient breeding strategy which maximises the value of everything produced on-farm, while meeting consumer requirements, is so important.


  • Genomic testing at birth allows for early screening
  • Ear tissue sample collects DNA in a liquid vile
  • Sample sent to Cogent for genotyping l DNA is segmented into 70,000 pieces
  • Information processed by the AHDB for UK evaluations
  • Results available via the Cogent PrecisionDNA interactive portal

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